cv.multiFSSEMiPALM: cv.multiFSSEMiPALM

In Ivis4ml/SparseSEMs: Sparse Structural Equation Models for jointly inferring Gene Regulatory Networks

Description

cv.multiFSSEMiPALM

Usage

cv.multiFSSEMiPALM(Xs, Ys, Bs, Fs, Sk, sigma2, nlambda = 20, nrho = 20,
  nfold = 5, p, q, wt = TRUE, plot = FALSE)

Arguments

Xs	eQTL matrices
Ys	Gene expression matrices
Bs	initialized GRN-matrices
Fs	initialized eQTL effect matrices
Sk	eQTL index of genes
sigma2	initialized noise variance
nlambda	number of hyper-parameter of lasso term in CV
nrho	number of hyper-parameter of fused-lasso term in CV
nfold	CVfold number. Default 5/10
p	number of genes
q	number of eQTLs
wt	use adaptive lasso or not. Default TRUE.
plot	plot contour of cvmean or not. Default FALSE.

Value

list of cross-validation result

Ivis4ml/SparseSEMs documentation built on May 23, 2019, 2:43 p.m.