getDifferentialGenes: Differential expression analysis (adapted from PAGODA2)
In JEFworks-Lab/MERINGUE: Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with non-uniform cellular densities
getDifferentialGenes R Documentation
Differential expression analysis (adapted from PAGODA2)
Description
Differential expression analysis (adapted from PAGODA2)
Usage
getDifferentialGenes(cd, cols, verbose = TRUE)
Arguments
cd
A read count matrix. The rows correspond to genes, columns correspond to individual cells
cols
Column/cell group annotations. Will perform one vs. all differential expression analysis.
verbose
Verbosity
JEFworks-Lab/MERINGUE documentation built on June 8, 2022, 11:41 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| getDifferentialGenes | R Documentation |
Differential expression analysis (adapted from PAGODA2)
Description
Differential expression analysis (adapted from PAGODA2)
Usage
getDifferentialGenes(cd, cols, verbose = TRUE)
Arguments
cd |
A read count matrix. The rows correspond to genes, columns correspond to individual cells |
cols |
Column/cell group annotations. Will perform one vs. all differential expression analysis. |
verbose |
Verbosity |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.