getMnn: Mutual nearest neighbors
In JEFworks-Lab/MERINGUE: Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with non-uniform cellular densities
View source: R/nearestNeighbor.R
getMnn R Documentation
Mutual nearest neighbors
Description
Mutual nearest neighbors in space between group A and B based on position
Usage
getMnn(ctA, ctB, pos, k)
Arguments
ctA
vector of cell names in group A
ctB
vector of cell names in group B
pos
Position
k
Number of mutual nearest neighbors
Value
Boolean matrix where value = 1 if two cells are considered adjacency ie. neighbors, else 0
JEFworks-Lab/MERINGUE documentation built on June 8, 2022, 11:41 p.m.
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View source: R/nearestNeighbor.R
| getMnn | R Documentation |
Mutual nearest neighbors
Description
Mutual nearest neighbors in space between group A and B based on position
Usage
getMnn(ctA, ctB, pos, k)
Arguments
ctA |
vector of cell names in group A |
ctB |
vector of cell names in group B |
pos |
Position |
k |
Number of mutual nearest neighbors |
Value
Boolean matrix where value = 1 if two cells are considered adjacency ie. neighbors, else 0
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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