escoEstLib: Estimate esco library size parameters
In JINJINT/splattermodify: Simple Simulation of Single-cell RNA Sequencing Data
Description
Usage
Arguments
Value
View source: R/esco-estimate.R
Description
The Shapiro-Wilks test is used to determine if the library sizes are
normally distributed. If so a normal distribution is fitted to the library
sizes, if not (most cases) a log-normal distribution is fitted and the
estimated parameters are added to the params object. See
fitdist for details on the fitting.
Usage
1
escoEstLib(counts, norm.counts, params)
Arguments
counts
counts matrix to estimate parameters from.
norm.counts
library size normalised counts matrix.
params
escoParams object to store estimated values in.
Value
escoParams object with estimated values.
JINJINT/splattermodify documentation built on May 19, 2021, 4:05 p.m.
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Description Usage Arguments Value
View source: R/esco-estimate.R
Description
The Shapiro-Wilks test is used to determine if the library sizes are
normally distributed. If so a normal distribution is fitted to the library
sizes, if not (most cases) a log-normal distribution is fitted and the
estimated parameters are added to the params object. See
fitdist for details on the fitting.
Usage
1 | escoEstLib(counts, norm.counts, params)
|
Arguments
counts |
counts matrix to estimate parameters from. |
norm.counts |
library size normalised counts matrix. |
params |
|
Value
escoParams object with estimated values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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