Detection of de novo deletion in targeted sequencing trios

calcBins | Sample driven calculation of bins for counting |

calcCounts | Creating the raw count matrix |

calcMD | Calculating the Minimum Distance matrix |

denovoDeletions | Denovo Deletion Calling |

MDTS-package | The MDTS package for Detection of Denovo Deletions from... |

normalizeCounts | Calculating the normalized M scores |

pData | Constructor for pData |

segmentMD | Circular Binary Segmentation on Minimum Distances |

visualizeDeletion | Visualization for deletions |

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