Description Usage Arguments Value Examples
This function allows constructor of phenotype information necessary for downstream analysis. See format of required fields. Function will also rearrange the rows such that trios are grouped together - with proband first, mother second, and father third.
1 2 | getMetaData(path, id = "subj_id", familyId = "family_id",
fatherId = "father_id", motherId = "mother_id", bamPath = "bam_path")
|
path |
The path pointing to the file that contains information on each subject in the dataset. |
id |
The column name that identifies each sample. Defaults to 'subj_id'. |
familyId |
The column name that identifies which family the sample belongs to. Defaults to 'family_id'. |
fatherId |
The column name that identifies the id of the father. Defaults to 'father_id'. |
motherId |
The column name that identifies the id of the mother. Defaults to 'mother_id'. |
bamPath |
The column name that identifies where to find the bam file for each subject. Defaults to 'bam_path'. |
Returns a data.frame
of required sample information for
running MDTS.
1 2 | meta <- getMetaData(
'https://raw.githubusercontent.com/JMF47/MDTSData/master/data/pD.ped')
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.