SISfsMCMCexperiment: Variance of beta, gamma for varying number of panels.

In JMacDonaldPhD/Epidemics: Inference For Epidemics (one line, title case)

Description

Same SIS epidemic which occurs in population size N, (set.seed(1))

Usage

SISfsMCMCexperiment(
  noPanels,
  lastObs,
  noDraws,
  lambda0,
  V0,
  blockSize,
  adapt = TRUE,
  noIts = 10000,
  burnIn = 1000
)

Details

We observe the same m = 0.1*N individuals, but vary how often they are observed.

In this simulated situation, the average infectious period is a unit length of time (\gamma = 1).

R_0 is chosen to be above 1 and relitively small, but large enough that the disease will reach an endemic state.

\beta

is then calculated from \gamma, R_0 and N

Sample Panel Data

JMacDonaldPhD/Epidemics documentation built on Jan. 10, 2020, 2:48 a.m.