Man pages for JMacDonaldPhD/REpi
Pseudo-Marginal Analysis of partially observed Epidemics
| adapt_BS_PF | Bootstrap Particle Filter Adaptation |
| adapt_IS | Importance Sampler Adaptation |
| adapt_ISMCMC | Independence Sampler/RWM MCMC Adaptation |
| adapt_particleMCMC | Particle MCMC Adaptation |
| adapt_PsMCMC | Pseudo-Marginal MCMC Adaptation |
| BS_PF | Bootstrap Particle Filter |
| caseAscObsModel | Case Ascertainment observational model for a discrete-time... |
| generic_PF | Generic Particle Filter |
| IS | Importance Sampler |
| ISMCMC | Independence Sampler/RWM MCMC |
| llh | epiModel$llh |
| metaSIR | Discrete-time SIR epidemic model |
| metaSIR_NC | Generate a non-centered discrete-time epidemic model |
| oneDayConditioned_proposal | Bootstrap Proposals |
| particleMCMC | Particle MCMC |
| plotMCMC | Plot MCMC Samples and Diagnostics |
| PsMCMC | Pseudo-Marginal MCMC |
| r-slash-dcaseAscObsModel | Case Ascertainment observational model for a discrete-time... |
| sim | epiModel$sim |
| testingObsModel | Case Ascertainment observational model for a discrete-time... |
| VBS_PF | Bootstrap Particle Filter using vectorised simulator |
