Man pages for JPSieg/R2easyR
Facilitates Mapping Experimental RNA Reactivity Data to Secondary Structures Drawn with R2R
| add.dot.bracket | Converts RNA secondary structure information in a .ct file... |
| check.accn | Makes a list of accension numbers that are the same |
| peter.ct.reformat | A function that reformats Peter's double tabdelimited files... |
| r2easyR.color | Assigns colors to reactivity values |
| r2easyR.custom.palette | Generates a custom palette |
| r2easyR.go_fast | Prodeces R2R inputs in bulk with optimized layouts |
| r2easyR.grey_letters_editor | This function edits a R2R stockholm file to recolor... |
| r2easyR.palettes | Generates a list of palettes |
| r2easyR.pk_finder | Identifies non-nested base pairs (pseudoknots) from an RNA... |
| r2easyR.pknot_drawer | Edits a R2R stockholm file for drawing psuedoknot labels on... |
| r2easyR.stem_editor | A function that optimizes the stem layout for a RNA... |
| r2easyR.tRNA_stem_editor | A function that optomizes the stem layout for a tRNA... |
| r2easyR.write | Generates a Stockholm file and a R2R meta file that can be... |
| read.connect | Read a .connect file file |
| read.ct | Read a .ct file |
| read.genbank.csv | Read a csv file from genbank |
| read.react | Read a .react file |
| read.rnabob | Loads an RNABOB output file into a R data frame |
| read.rtsc | Read a .rtsc file |
| read.shape | Read a .shape file |
| read.stock | Read a Stockholm file |
| RFAM_sto_to_ct | A that converts a RFAM formatted sto file to a connectivity... |
| ry.tRNA | Custom R2easyR script that writes R2R inputs based on Ryota's... |
| What.bob.knows | Identifies what known RNA were identified by a motif seach... |
