r2easyR.write: Generates a Stockholm file and a R2R meta file that can be...

In JPSieg/R2easyR: Facilitates Mapping Experimental RNA Reactivity Data to Secondary Structures Drawn with R2R

Generates a Stockholm file and a R2R meta file that can be read by R2R to draw a secondary structure.

Description

Generates a Stockholm file and a R2R meta file that can be read by R2R to draw a secondary structure.

Usage

r2easyR.write(output, data_frame, RNA_name = "default", colors = "NA")

Arguments

output	Path to the output Stockholm file
data_frame	A data_frame containing columns labeled "Nucleotide", "Dotbracket", "Labels", and "Colors".
RNA_name	The name of the RNA that you are drawing
colors	How R2R will draw reactivity colors. No colors = "NA". Colored letters = "letters". Colored circles = "circles".

Value

A Stockholm formated file.

JPSieg/R2easyR documentation built on Aug. 10, 2024, 6:12 p.m.