fasta2df: Return a dataframe object with fasta information

In JackXu2333/dseAnalysis: Correlation analysis of RNA secondary structure mutation and differential expression

Description

Perform fasta file retrieving using readRNAStringSet function from Biostrings, result stored in standarlize data.frame for easy usage.

Usage

fasta2df(filepath)

Arguments

filepath

The path directed to fasta file on current working directory

Value

Return a data.frame object contain fasta document loaded

• NAME - Corresponding of the RNA sequence

• SEQ - The original RNA sequence

Author(s)

Sijie Xu, [e-mail]

References

H. Pagès, P. Aboyoun, R. Gentleman and S. DebRoy (2020). Biostrings: Efficient manipulation of biological strings. R package version 2.56.0.

Examples

filePath <- system.file("extdata", "test.fasta", package = "rseAnalysis")
fasta <- fasta2df(filePath)

JackXu2333/dseAnalysis documentation built on Dec. 31, 2020, 1:09 p.m.