| c.fam | S3 method for generic c() for 'fam' objects. |
| confidence | Generic method to compute confidence regions for mmi model... |
| c.spec_fam | S3 method for generic c() for 'spec_fam' objects. |
| ecrf | Demographical and clinical data from the article "Natural... |
| facs | Flow cytometry data from the article "Natural variation in... |
| facs_annotation | Names and annotation for the immunophenotypes in the facs... |
| fam-class | S4 class "fam" |
| fit_model | S3 Generic function fit_model to construct mmi_model objects. |
| ft | Generic method for F-tests. |
| initialize-spec_logreg-method | S4 initialize method for 'spec_logreg'. |
| initialize-spec-method | S4 initialize method for 'spec'. |
| initialize-spec_nb-method | S4 initialize method for 'spec_nb'. |
| lrt | Generic method for likelihood ratio tests. |
| make_fam | Constructs fam objects from a specification family. |
| mmi_beta-class | S4 class for representing a beta regression specification and... |
| mmi_lm-class | S4 class for representing a linear model specification and a... |
| mmi_lmm-class | S4 class for representing a linear mixed model specification... |
| mmi_logreg-class | S4 class for representing a logistic regression specification... |
| mmi_model-class | S4 class for a model representation and model fit. This is... |
| mmi_nb-class | S4 class for representing a negative binomial regression... |
| print.spec_fam | S3 method for generic print for spec_fam objects. |
| prop_var | Extract estimate of variance component to the treatment... |
| show-fam-method | S4 method for generic show for fam objects |
| show-spec_fam-method | S4 method for generic show for spec_fam objects |
| spec_beta-class | S4 class spec_nb for a beta regression specification. |
| spec_fam-class | An S4 class representing a family of specifications |
| specify | Constructs a list of model specifications from formula... |
| specify_with_list | Creates a 'spec_fam' from a list where each element is a list... |
| spec_lm-class | S4 class spec_lm for an lm model specification. |
| spec_lmm-class | S4 class spec_lmm for a linear model with random effects... |
| spec_logreg-class | S4 class spec_logreg for a logistic regression specification. |
| spec_nb-class | S4 class spec_nb for a negative binomial specification. |
| sub-.fam | S3 method for generic '[' for 'fam' objects. |
| sub-.spec_fam | S3 method for generic '[' for 'spec_fam' objects. |
| test | S3 generic method to do hypothesis tests in the mmi model and... |
| wald | A method is implemented for all the mmi model classes. A... |
