Description Usage Arguments Value
Perform Harvesting to a list of DIANA hierarcy obetained using
the funBI_lot_and_flower
function. The available harvesting
strategies are three: a delta
-threshold strategy, a dynamic strategy
with a threshold obtained as a percentage of the total hscore of a
considered hierarchical dendrogram, and an automatic strategy using
gap
statistics.
1 | funBI_harvesting(list_hc, delta, perc, gap, mat, Kmax, B)
|
list_hc |
a list of hierarchy resulting from DIANA built from |
delta |
a scalar value indicating the delta-threshold in order to
perform a delta-bicluster. In this case |
perc |
a scalar value indicated a percentage of the total score in order
to perform a delta-bicluster cut using as delta-threshold the
percentage |
gap |
TRUE/FALSE indicating if gap statistics should be used as
Harvesting strategy.In this case |
mat |
a matrix |
Kmax |
the maximum number of clusters to consider when performing gap
statistics ( |
B |
integer value, number of Monte Carlo (“bootstrap”) samples to
consider when performing gap statistics ( |
biclist
, a list containing all the candidate biclusters
according to the used Harvesting strategy. Every element of the list is a
bicluster. Every bicluster is characterized by the following components:
a vector containing the elements belonging to the
bicluster reprented using the row index/label of the matrix mat
a vector containing the boundaries of the sub-interval
considered represented usign the colum index/label of the matrix
mat
the Hscore of the bicluster
The index
of list_hc
, representing which dendogram the bicluster was cut
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