FishBase_and_Morphometrics: Database of FishBase (population-dynamics, size, growth,...
In James-Thorson/FishLife: Predict Life History Parameters For Any Fish
FishBase_and_Morphometrics R Documentation
Database of FishBase (population-dynamics, size, growth, maturity, mortality parameters),
habitat, trophic, reproductive, and morphometric traits
Description
Output from 'Fit_model' applied to database scraped from www.FishBase.org
using 'rfishbase' as well as many other variables
Usage
FishBase_and_Morphometrics
Format
A tagged list containing data and predictions
- text
text file specifying the SEM structure
- N_obsfactors
Number of factors used for measurent-error in life-history model
- beta_gv
Predictive mean (in transformed space) among traits for every taxon in tree
- Cov_gvv
Covariance among traits for every taxon in tree
- Use_REML
Boolean, whether REML was used for model
- ParentChild_gz
Record of taxonomic tree
- ParHat
Parameter estimates and predictions
- g_i
Associates every observation with a level of the taxonomic tree
- Y_ij
Life-history parameters from FishBase
- Z_ik
Taxonomy for each datum
- SR_obs
Stock-recruit records from RAM Legacy stock-recruit database
- StockData
Auxiliary information for every stock with stock-recruit information
- RAM
Matrix specifying SEM parameters
- SEM_model
Description of SEM path diagram
- tree
Evolutionary tree in phylo format, for use in plotting, with order matching ParentChild_gz
...
James-Thorson/FishLife documentation built on Feb. 29, 2024, 3:47 a.m.
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| FishBase_and_Morphometrics | R Documentation |
Database of FishBase (population-dynamics, size, growth, maturity, mortality parameters), habitat, trophic, reproductive, and morphometric traits
Description
Output from 'Fit_model' applied to database scraped from www.FishBase.org using 'rfishbase' as well as many other variables
Usage
FishBase_and_Morphometrics
Format
A tagged list containing data and predictions
- text
text file specifying the SEM structure
- N_obsfactors
Number of factors used for measurent-error in life-history model
- beta_gv
Predictive mean (in transformed space) among traits for every taxon in tree
- Cov_gvv
Covariance among traits for every taxon in tree
- Use_REML
Boolean, whether REML was used for model
- ParentChild_gz
Record of taxonomic tree
- ParHat
Parameter estimates and predictions
- g_i
Associates every observation with a level of the taxonomic tree
- Y_ij
Life-history parameters from FishBase
- Z_ik
Taxonomy for each datum
- SR_obs
Stock-recruit records from RAM Legacy stock-recruit database
- StockData
Auxiliary information for every stock with stock-recruit information
- RAM
Matrix specifying SEM parameters
- SEM_model
Description of SEM path diagram
- tree
Evolutionary tree in phylo format, for use in plotting, with order matching ParentChild_gz
...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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