plot_overdispersion: Plot estimated overdispersion

In James-Thorson/FishStatsUtils: Utilities (shared code and data) for FishStats spatio-temporal modeling toolbox

Plot estimated overdispersion

Description

plot_overdispersion plots sample and analytic estimates of overdispersion

Usage

plot_overdispersion(
  filename1,
  filename2,
  Data,
  ParHat,
  Report,
  SD = NULL,
  Map = NULL,
  ControlList1 = list(Width = 8, Height = 4, Res = 200, Units = "in"),
  ControlList2 = ControlList1
)

Arguments

filename1	filename (including absolute path) for overdispersion for component #1
filename2	filename (including absolute path) for overdispersion for component #2
Data	tagged list of input data
ParHat	Tagged list of fitted data, e.g., from ParHat <- obj$env$parList()
Report	output report, e.g., from Report <- obj$report()
SD	standard deviation report, e.g., from SD <- sdreport( obj )
Map	tagged list of map inputs
ControlList1	plotting size for component #1
ControlIist2	plotting size for component #2 (default: ControlList2 <- ControlList1)

Value

Tagged list containing inputs to function Build_TMB_Fn()

Cov1_cc

Covariance for component #1 (typically probability of occurence)

Cov2_cc

Covariance for component #2 (typically positive catch rates)

James-Thorson/FishStatsUtils documentation built on Feb. 6, 2024, 4:26 a.m.