Files in James-Thorson/VAST
Vector-Autoregressive Spatio-Temporal (VAST) Model
.Rbuildignore
.github/workflows/R-CMD-check.yml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/VAST.R
R/apply_epsilon.R
R/check_fit.R
R/effects.R
R/make_data.R
R/make_map.R
R/make_model.R
R/make_parameters.R
R/project_model.R
R/reload_model.R
R/zzz.R
README.md
VAST.Rproj
docs/index.html
docs/static/badge.png
docs/static/badge_external_active.png
docs/static/check.png
docs/static/greybadge.png
docs/static/greycheck.png
docs/static/icons8-checkmark-24-external-active.png
docs/static/icons8-email-send-24.png
docs/static/icons8-github-32.png
docs/static/icons8-pdf-50.png
docs/static/noaa-fisheries-rgb-2line-horizontal-small.png
docs/static/simple.css
inst/CITATION
inst/executables/VAST_v10_0_0.cpp
inst/executables/VAST_v11_0_0.cpp
inst/executables/VAST_v12_0_0.cpp
inst/executables/VAST_v13_0_0.cpp
inst/executables/VAST_v13_1_0.cpp
inst/executables/VAST_v14_0_0.cpp
inst/executables/VAST_v14_0_1.cpp
inst/executables/VAST_v8_0_0.cpp
inst/executables/VAST_v8_1_0.cpp
inst/executables/VAST_v8_2_0.cpp
inst/executables/VAST_v8_3_0.cpp
inst/executables/VAST_v8_4_0.cpp
inst/executables/VAST_v8_5_0.cpp
inst/executables/VAST_v8_6_0.cpp
inst/executables/VAST_v9_0_0.cpp
inst/executables/VAST_v9_1_0.cpp
inst/executables/VAST_v9_2_0.cpp
inst/executables/VAST_v9_3_0.cpp
inst/executables/VAST_v9_4_0.cpp
inst/extdata/Condition_and_density/saved_estimates.RData
inst/extdata/EBS_3species/Data_Geostat.RData
inst/extdata/EBS_3species/Kmeans-50.RData
inst/extdata/EBS_3species/Record.RData
inst/extdata/EBS_3species/opt.RData
inst/extdata/EBS_3species/parhat.RData
inst/extdata/EBS_5species/Data_Geostat.RData
inst/extdata/EBS_5species/Kmeans-100.RData
inst/extdata/EBS_5species/Record.RData
inst/extdata/EBS_5species/opt.RData
inst/extdata/EBS_5species/parhat.RData
inst/extdata/EOF/Kmeans_extrapolation-2000.RData
inst/extdata/EOF/Kmeans_knots-50.RData
inst/extdata/EOF/parameter_estimates.RData
inst/extdata/GOA_MICE_example/Kmeans-50.RData
inst/extdata/GOA_MICE_example/saved_estimates.RData
inst/extdata/GOA_MICE_example/settings.RData
inst/extdata/Lingcod_comp_expansion/Data_Geostat.RData
inst/extdata/Lingcod_comp_expansion/Kmeans-50.RData
inst/extdata/Lingcod_comp_expansion/Record.RData
inst/extdata/Lingcod_comp_expansion/opt.RData
inst/extdata/Spatially_varying_coefficient/Data.RData
inst/extdata/Spatially_varying_coefficient/Kmeans-100.RData
inst/extdata/Spatially_varying_coefficient/saved_estimates.RData
inst/extdata/Spatially_varying_coefficient/settings.RData
inst/extdata/Stream_network/parameter_estimates.RData
inst/extdata/Stream_network/settings.RData
man/Build_TMB_Fn.Rd
man/Data_Fn.Rd
man/Effect.fit_model.Rd
man/Param_Fn.Rd
man/Plot_Overdispersion.Rd
man/Plot_factors.Rd
man/Summarize_Covariance.Rd
man/VAST.Rd
man/apply_epsilon.Rd
man/check_fit.Rd
man/make_data.Rd
man/make_map.Rd
man/make_model.Rd
man/make_parameters.Rd
man/print.make_data.Rd
man/print.make_model.Rd
man/project_model.Rd
man/reload_model.Rd
manual/NEWS.docx
manual/NEWS.pdf
manual/VAST_Species_Distribution_Modeling_Workflow.png
manual/VAST_model_structure.docx
manual/VAST_model_structure.pdf
manual/~$ST_model_structure.docx
tests/testthat.R
tests/testthat/setup.R
tests/testthat/test-EOF.R
tests/testthat/test-Tweedie-against-mgcv.R
tests/testthat/test-catchability_against_glm.R
tests/testthat/test-combining-categories.R
tests/testthat/test-comp-expansion.R
tests/testthat/test-condition-and-density.R
tests/testthat/test-covariates_against_glm.R
tests/testthat/test-goa-mice-example.R
tests/testthat/test-multi-species-examples.R
tests/testthat/test-past-versions.R
tests/testthat/test-platform.R
tests/testthat/test-random_beta_against_glmer.R
tests/testthat/test-single-species-examples.R
tests/testthat/test-spatially-varying-coefficient.R
tests/testthat/test-stream-network-examples.R
tests/testthat/test-zeroinfl-against-pscl.R
vignettes/VAST.Rmd
