vascr_import: Import impedance data to a vascr dataset

In JamesHucklesby/vascr: Toolkit for Processing Vascular Impedance Data

Import impedance data to a vascr dataset

Description

Import impedance data to a vascr dataset

Usage

vascr_import(
  instrument,
  raw = NULL,
  model = NULL,
  key = NULL,
  experimentname = "NA",
  password = "RTCaDaTa"
)

Arguments

instrument	The instrument to import from.
raw	Path to the raw dataset. Ignored if not set
model	Path to the modeled dataset. Ignored if not set
key	Key file, containing data on which well contains what data
experimentname	Name to assign to the experiment
password	The password for protected xCELLigence files

Value

A full vascr dataset

Examples

# ECIS test
rawdata = system.file('extdata/instruments/ecis_TimeResample.abp', package = 'vascr')
modeleddata = system.file('extdata/instruments/ecis_TimeResample_RbA.csv', package = 'vascr')
sampledefine = system.file('extdata/instruments/eciskey.csv', package = 'vascr')

#Then run the import
data1 = vascr_import("ECIS", model = modeleddata, key = sampledefine, experimentname = "TEST1")
data2 = vascr_import("ECIS", raw = rawdata, key = sampledefine, experimentname = "TEST2")
data3 = vascr_import("ECIS",model = modeleddata, raw = rawdata, 
key = sampledefine, experimentname = "TEST3")

# cellZscope test
rawdata = system.file('extdata/instruments/zscoperaw.txt', package = 'vascr')
modeleddata = system.file('extdata/instruments/zscopemodel.txt', package = 'vascr')
sampledefine = system.file('extdata/instruments/zscopekey.csv', package = 'vascr')

data4 = vascr_import("cellZscope", model = modeleddata, key = sampledefine, 
experimentname = "TEST4")
data5 = vascr_import("cellZscope", raw = rawdata, key = sampledefine, experimentname = "TEST5")
data6 = vascr_import("cellZscope",model = modeleddata, raw = rawdata, 
key = sampledefine, experimentname = "TEST6")

# xCELLigence test
rawdata = system.file('extdata/instruments/xcell.plt', package = 'vascr')
sampledefine = system.file('extdata/instruments/xcellkey.csv', package = 'vascr')

JamesHucklesby/vascr documentation built on April 30, 2024, 8:33 a.m.