vascr_import: Import an impedance datafile to vascr

In JamesHucklesby/vascr: Process Biological Impedance Sensing Data

Import an impedance datafile to vascr

Description

Import an impedance datafile to vascr

Usage

vascr_import(
  instrument = NULL,
  raw = NULL,
  modeled = NULL,
  experiment = NULL,
  shear = FALSE
)

Arguments

instrument	Instrument to import from, either ECIS, xCELLigence or cellZscope
raw	Path to raw data file
modeled	Path to modeled data file from manufacturer's software
experiment	Name for the experiment being imported

Value

A vascr dataset for subsequent analysis

Examples

# ECIS
raw = system.file('extdata/instruments/ecis_TimeResample.abp', package = 'vascr')
modeled = system.file('extdata/instruments/ecis_TimeResample_RbA.csv', package = 'vascr')
vascr_import("ECIS", raw, modeled, "ECIS_Data")

# xCELLigence
raw = system.file('extdata/instruments/xcell.plt', package = 'vascr')
# No modeling for this system
vascr_import("xCELLigence", raw, experiment = "xCELLigence")

# cellZscope
model = system.file("extdata/instruments/zscopemodel.txt", package = "vascr")
raw = system.file("extdata/instruments/zscoperaw.txt", package = "vascr")
vascr_import("cellzscope", raw, model, "cellZscope")

#' # ScioSpec
raw = system.file("extdata/instruments/ScioSpec", package = "vascr")
vascr_import("sciospec", raw, model, "ScioSpec")

JamesHucklesby/vascr documentation built on July 16, 2025, 8:16 p.m.