Files in Japal/MALDIrppa

MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis

.DS_Store

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

MALDIrppa.Rproj

NAMESPACE

NEWS

R/.DS_Store

R/adapt.out.R R/addMetadata.R R/alignPeaks.R R/arw.R R/countPeaks.R R/deletePeaks.R R/detectOutliers.R R/exportFasta.R R/exportNexus.R R/importSpectra.R R/peakPatterns.R R/plot.patterns.R R/plot.scSpectra.R R/rawToPeaks.R R/rawToSpectra.R R/redResolution.R R/sc.filter.R R/screenSpectra.R R/snrPeaks.R R/summary.scSpectra.R R/summaryPeaks.R R/summarySpectra.R R/summaryStats.R R/transfIntensity.R R/wavSmoothing.R R/writeIntensity.R R/writeMetadata.R README.md

_pkgdown.yml

data/.DS_Store

data/spectra.rda

data/type.rda

docs/404.html

docs/articles/MALDIrppa_vignette.html

docs/articles/MALDIrppa_vignette_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/MALDIrppa_vignette_files/figure-html/iniscreening-1.png

docs/articles/MALDIrppa_vignette_files/figure-html/intmatrix-1.png

docs/articles/MALDIrppa_vignette_files/figure-html/intmatrix2-1.png

docs/articles/MALDIrppa_vignette_files/figure-html/npeaks-1.png

docs/articles/MALDIrppa_vignette_files/figure-html/spectraplots10-1.png

docs/articles/MALDIrppa_vignette_files/figure-html/spectraplots10-2.png

docs/articles/MALDIrppa_vignette_files/figure-html/spectraplots10-3.png

docs/articles/index.html

docs/articles/lqgq_plot.png

docs/articles/od_plot.png

docs/articles/phylo_net.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/MALDIrppa-package.html

docs/reference/addMetadata.html

docs/reference/alignPeaks.html

docs/reference/countPeaks.html

docs/reference/deletePeaks.html

docs/reference/detectOutliers.html

docs/reference/importSpectra.html

docs/reference/index.html

docs/reference/peakPatterns-1.png

docs/reference/peakPatterns-2.png

docs/reference/peakPatterns.html

docs/reference/plot.scSpectra-1.png

docs/reference/plot.scSpectra-2.png

docs/reference/plot.scSpectra-3.png

docs/reference/plot.scSpectra-4.png

docs/reference/plot.scSpectra.html

docs/reference/rawToPeaks.html

docs/reference/rawToSpectra.html

docs/reference/redResolution.html

docs/reference/screenSpectra-1.png

docs/reference/screenSpectra.html

docs/reference/snrPeaks.html

docs/reference/spectra-1.png

docs/reference/spectra.html

docs/reference/summary.scSpectra.html

docs/reference/summaryPeaks.html

docs/reference/summarySpectra.html

docs/reference/transfIntensity.html

docs/reference/type.html

docs/reference/wavSmoothing.html

docs/reference/writeIntensity.html

docs/reference/writeMetadata.html

inst/.DS_Store

inst/CITATION

man/MALDIrppa-package.Rd man/addMetadata.Rd man/alignPeaks.Rd man/countPeaks.Rd man/deletePeaks.Rd man/detectOutliers.Rd man/importSpectra.Rd man/peakPatterns.Rd man/plot.scSpectra.Rd man/rawToPeaks.Rd man/rawToSpectra.Rd man/redResolution.Rd man/screenSpectra.Rd man/snrPeaks.Rd man/spectra.Rd man/summary.scSpectra.Rd man/summaryPeaks.Rd man/summarySpectra.Rd man/transfIntensity.Rd man/type.Rd man/wavSmoothing.Rd man/writeIntensity.Rd man/writeMetadata.Rd

tests/.DS_Store

tests/testthat.R tests/testthat/test_all.R

tests/testthat/testpeaks.rda

tests/testthat/testspectra.rda

tests/testthat/testtype.rda

vignettes/.DS_Store

vignettes/MALDIrppaVignette.bib

vignettes/MALDIrppa_vignette_v105.Rmd vignettes/MALDIrppa_vignette_v110.Rmd

vignettes/lqgq_plot.png

vignettes/od_plot.png

vignettes/phylo_net.png

Japal/MALDIrppa documentation built on Jan. 31, 2024, 12:15 p.m.