summary.scSpectra: Numerical summary of 'screenSpectra' objects

In Japal/MALDIrppa: MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis

Numerical summary of screenSpectra objects

Description

This is a summary method for scSpectra objects that generates a numerical summary of the settings and results from applying screenSpectra to identify potential faulty, low-quality raw mass spectra.

Usage

## S3 method for class 'scSpectra'
summary(object, ncases = 10, ...)

Arguments

object	A scSpectra object as generated from screenSpectra.
ncases	Number of cases shown in the results table.
...	Other arguments.

Details

A table is generated that includes details of the numerical estimations along with mass spectra ID, A score and the label for each mass spectra, either potentially low-quality (failure) or good-quality (success).

Value

No return value, text printed on console.

See Also

See screenSpectra and plot.scSpectra.

Examples

# Load example data

data(spectra) # list of MassSpectra objects

sc.results <- screenSpectra(spectra)
summary(sc.results)

Japal/MALDIrppa documentation built on Jan. 31, 2024, 12:15 p.m.