Description Usage Arguments Value Examples
Executes the simulation for a given region and species.
1 2 3 4 5 6 7 | runAnalysis(Mcmc_prediction = TRUE, Abundance_or_catch = "Catch",
Mcmc_sample = 1, Mcmc_seed = 200, Which_species, Which_region,
Years = NULL, Env_covariate = c("SURFACE_TEMPERATURE",
"GEAR_TEMPERATURE", "BOTTOM_DEPTH"), Transform_covariate = c("ID",
"ID", "LOG"), Include_year_effect = FALSE, Include_2_order = TRUE,
Standardize_variable = FALSE, Spacetime = "AR",
YEARS_pred = 1982:2016, Overwrite = FALSE)
|
year |
Either a single year or 2 element vector with maximum and minimum year to retrieve. |
survey |
String for intended survey (EBS_SHELF, EBS_SLOPE, NBS_SHELF, GOA, AI). |
The output is a list of years and densities. The output must be re-joined to the Predict_data object for spatial analysis.
YEARS_USE |
Vector of available years |
SDM_result |
Matrix of densities per year, rows for a given year correspond to Predict_data rows. |
1 | ## TBD
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