| .DGEExact.to.data.frame |
Source code
|
| .DGEExact.to.html |
Source code
|
| .DGELRT.to.data.frame |
Source code
|
| .DGELRT.to.html |
Source code
|
| .GOhyperG.to.data.frame |
Source code
Source code
|
| .GOhyperG.to.html |
Source code
|
| .GeneSet.to.data.frame |
Source code
|
| .GeneSetCollection.to.data.frame |
Source code
|
| .GeneSetCollection.to.html |
Source code
|
| .GeneSetCollection.to.html2 |
Source code
|
| .PFAMhyperG.to.data.frame |
Source code
|
| .PFAMhyperG.to.html |
Source code
|
| .PFAMhyperG.to.htmlDF2 |
Source code
|
| .doImage |
Source code
|
| .filter.vals |
Source code
|
| .hyperG.to.data.frame |
Source code
|
| .make.gene.plots |
Source code
|
| .makeSplash |
Source code
|
| .marrayLM.to.data.frame |
Source code
|
| .marrayLM.to.html |
Source code
|
| .normalizeSubscript |
Source code
|
| .onAttach |
Source code
|
| .safe.dir.create |
Source code
|
| .save.rda.by.name |
Source code
|
| .save.rda.fn |
Source code
|
| .writeHTMLTable |
Source code
|
| BaseReport-class |
Man page
|
| CSVFile |
Man page
Source code
|
| CSVFile-class |
Man page
|
| DataPackage |
Man page
Source code
|
| DataPackage-class |
Man page
|
| HTMLReport |
Man page
Source code
|
| HTMLReport-class |
Man page
|
| HTMLReportRef-class |
Man page
|
| Link |
Man page
|
| Link,HTMLReportRef-method |
Man page
|
| Link,character-method |
Man page
|
| Link,list-method |
Man page
|
| Link-methods |
Man page
|
| ReportHandlers-class |
Man page
|
| [[,HTMLReportRef,ANY,ANY-method |
Man page
|
| [[,HTMLReportRef,ANY-method |
Man page
|
| [[<-,HTMLReportRef,ANY,ANY,ANY-method |
Man page
|
| annotate.genes |
Source code
|
| basePath |
Man page
|
| basePath,HTMLReport-method |
Man page
|
| baseUrl |
Man page
|
| baseUrl,HTMLReport-method |
Man page
|
| check.eg.ids |
Source code
|
| check.ids |
Source code
|
| connectionHandlers |
Man page
Source code
|
| custHeaderPanel |
Man page
Source code
|
| dependencies |
Man page
|
| dependencies,DataPackage-method |
Man page
|
| dependencies<- |
Man page
|
| dependencies<-,DataPackage,character-method |
Man page
|
| eSetPlot |
Source code
|
| entrezGene.link |
Source code
|
| fileHandlers |
Man page
Source code
|
| fileWIndexHandlers |
Man page
Source code
|
| filename |
Man page
|
| filename,CSVFile-method |
Man page
|
| filename,HTMLReport-method |
Man page
|
| filename-methods |
Man page
|
| finish |
Man page
|
| finish,DataPackage-method |
Man page
|
| finish,HTMLReport-method |
Man page
|
| finish,HTMLReportRef-method |
Man page
|
| finish-methods |
Man page
|
| getNamesAndSymbols |
Source code
|
| grabScriptAndStyle |
Source code
|
| hyperGPlot |
Source code
|
| knitrHandlers |
Man page
Source code
|
| makeDESeqDF |
Source code
Source code
|
| makeDESeqFigures |
Source code
|
| makeGeneListPages |
Source code
|
| makeGeneListPagesGSC |
Source code
|
| makeOldHTMLReport |
Man page
Source code
|
| makePageEnd |
Source code
|
| makeReportPath |
Source code
|
| mockRnaSeqData |
Man page
|
| modifyReportDF |
Man page
|
| modifyReportDF,ANY,ANY,ANY-method |
Man page
|
| modifyReportDF,ANY,ANY,DESeqDataSet-method |
Man page
|
| modifyReportDF,ANY,ANY,DESeqResults-method |
Man page
|
| modifyReportDF,ANY,ANY,DGEExact-method |
Man page
|
| modifyReportDF,ANY,ANY,DGELRT-method |
Man page
|
| modifyReportDF,ANY,ANY,GOHyperGResult-method |
Man page
|
| modifyReportDF,ANY,ANY,GeneSet-method |
Man page
|
| modifyReportDF,ANY,ANY,MArrayLM-method |
Man page
|
| modifyReportDF-methods |
Man page
|
| name |
Man page
|
| name,BaseReport-method |
Man page
|
| name<-,BaseReport,character-method |
Man page
|
| name<-,CSVFile,character-method |
Man page
|
| name<-,HTMLReport,character-method |
Man page
|
| nullFun |
Source code
|
| objectToHTML |
Man page
|
| objectToHTML,ANY-method |
Man page
|
| objectToHTML,XMLInternalNode-method |
Man page
|
| objectToHTML,character-method |
Man page
|
| objectToHTML,data.frame-method |
Man page
|
| objectToHTML,ggbio-method |
Man page
|
| objectToHTML,ggplot-method |
Man page
|
| objectToHTML,recordedplot-method |
Man page
|
| objectToHTML,trellis-method |
Man page
|
| objectToHTML-methods |
Man page
|
| page |
Man page
|
| page,HTMLReport-method |
Man page
|
| page<- |
Man page
|
| page<-,HTMLReport,character-method |
Man page
|
| path |
Man page
|
| path,BaseReport-method |
Man page
|
| path,DataPackage-method |
Man page
|
| path,HTMLReport-method |
Man page
|
| path,HTMLReportRef-method |
Man page
|
| path,ReportHandlers-method |
Man page
|
| plotGOResults |
Source code
|
| publish |
Man page
|
| publish,ANY,DataPackage-method |
Man page
|
| publish,ANY,HTMLReport-method |
Man page
|
| publish,ANY,HTMLReportRef-method |
Man page
|
| publish,ANY,list-method |
Man page
|
| publish,DESeqDataSet,HTMLReportRef-method |
Man page
|
| publish,DESeqResults,HTMLReportRef-method |
Man page
|
| publish,DGEExact,ANY-method |
Man page
|
| publish,DGEExact,HTMLReport-method |
Man page
|
| publish,DGEExact,HTMLReportRef-method |
Man page
|
| publish,DGELRT,ANY-method |
Man page
|
| publish,DGELRT,HTMLReport-method |
Man page
|
| publish,DGELRT,HTMLReportRef-method |
Man page
|
| publish,GOHyperGResult,ANY-method |
Man page
|
| publish,GOHyperGResult,HTMLReport-method |
Man page
|
| publish,GOHyperGResult,HTMLReportRef-method |
Man page
|
| publish,GeneSet,HTMLReport-method |
Man page
|
| publish,GeneSetCollection,ANY-method |
Man page
|
| publish,GeneSetCollection,HTMLReport-method |
Man page
|
| publish,GeneSetCollection,HTMLReportRef-method |
Man page
|
| publish,HTMLReport,HTMLReport-method |
Man page
|
| publish,HTMLReport,HTMLReportRef-method |
Man page
|
| publish,HyperGResultBase,HTMLReport-method |
Man page
|
| publish,HyperGResultBase,HTMLReportRef-method |
Man page
|
| publish,MArrayLM,ANY-method |
Man page
|
| publish,MArrayLM,HTMLReport-method |
Man page
|
| publish,MArrayLM,HTMLReportRef-method |
Man page
|
| publish,PFAMHyperGResult,ANY-method |
Man page
|
| publish,PFAMHyperGResult,HTMLReport-method |
Man page
|
| publish,PFAMHyperGResult,HTMLReportRef-method |
Man page
|
| publish,character,DataPackage-method |
Man page
|
| publish,data.frame,CSVFile-method |
Man page
|
| publish,data.frame,DataPackage-method |
Man page
|
| publish,data.frame,HTMLReport-method |
Man page
|
| publish,data.frame,HTMLReportRef-method |
Man page
|
| publish,list,HTMLReport-method |
Man page
|
| publish,list,HTMLReportRef-method |
Man page
|
| publish,trellis,HTMLReport-method |
Man page
|
| publish,trellis,HTMLReportRef-method |
Man page
|
| publish-methods |
Man page
|
| readReport |
Man page
Source code
|
| reportDirectory |
Man page
|
| reportDirectory,BaseReport-method |
Man page
|
| reportDirectory<- |
Man page
|
| reportDirectory<-,BaseReport,character-method |
Man page
|
| reporting.theme |
Man page
Source code
|
| reporting.theme.alternate |
Man page
Source code
|
| shinyHandlers |
Man page
Source code
|
| show,BaseReport-method |
Man page
|
| show,HTMLReport-method |
Man page
|
| show,HTMLReportRef-method |
Man page
|
| startHTMLReport |
Source code
|
| title |
Man page
|
| title,BaseReport-method |
Man page
|
| title<- |
Man page
|
| title<-,BaseReport,character-method |
Man page
|
| toReportDF |
Man page
|
| toReportDF,ANY-method |
Man page
|
| toReportDF,DESeqDataSet-method |
Man page
|
| toReportDF,DESeqResults-method |
Man page
|
| toReportDF,DGEExact-method |
Man page
|
| toReportDF,DGELRT-method |
Man page
|
| toReportDF,GOHyperGResult-method |
Man page
|
| toReportDF,GeneSet-method |
Man page
|
| toReportDF,GeneSetCollection-method |
Man page
|
| toReportDF,MArrayLM-method |
Man page
|
| toReportDF,PFAMHyperGResult-method |
Man page
|
| toReportDF,data.frame-method |
Man page
|
| toReportDF-methods |
Man page
|
| url,HTMLReport-method |
Man page
|
| validConnection |
Man page
Source code
|
