rnaSeq: A sample RNA-seq dataset containing 4,000 genes and 8...
In JasonPBennett/GECO: A metric to determine the biological quality of gene clusters
Description
Usage
Format
Source
Description
A sample RNA-seq dataset containing 4,000 genes and 8 individuals (4M, 4F),
each with 15 immune-specific cell types present.
Usage
1
Format
A data frame with columns:
- Male1_MONOCYTES
Expression levels from Classical Monocytes.
- Male1_B_CELL_NAIVE
Expression levels from naive B cells.
- Male1_CD8_NAIVE
Expression levels from naive CD8 T cells
- Male1_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Male1_TH2
Expression levels from Th2 T cells.
- Male1_THSTAR
Expression levels from Th1/17 T cells.
- Male1_TH17
Expression levels from Th17 T cells.
- Male1_TH1
Expression levels from Th1 T cells.
- Male1_TFH
Expression levels from T follicular helper T cells.
- Male1_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Male1_TREG_MEM
Expression levels from memory regulatory T cells.
- Male1_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Male1_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Male1_M2
Expression levels from Non-classical Monocytes.
- Male1_NK
Expression levels from Natural Killer cells.
- Male2_MONOCYTES
Expression levels from Classical Monocytes.
- Male2_B_CELL_NAIVE
Expression levels from naive B cells.
- Male2_CD8_NAIVE
Expression levels from naive CD8 T cells
- Male2_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Male2_TH2
Expression levels from Th2 T cells.
- Male2_THSTAR
Expression levels from Th1/17 T cells.
- Male2_TH17
Expression levels from Th17 T cells.
- Male2_TH1
Expression levels from Th1 T cells.
- Male2_TFH
Expression levels from T follicular helper T cells.
- Male2_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Male2_TREG_MEM
Expression levels from memory regulatory T cells.
- Male2_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Male2_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Male2_M2
Expression levels from Non-classical Monocytes.
- Male2_NK
Expression levels from Natural Killer cells.
- Male3_MONOCYTES
Expression levels from Classical Monocytes.
- Male3_B_CELL_NAIVE
Expression levels from naive B cells.
- Male3_CD8_NAIVE
Expression levels from naive CD8 T cells
- Male3_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Male3_TH2
Expression levels from Th2 T cells.
- Male3_THSTAR
Expression levels from Th1/17 T cells.
- Male3_TH17
Expression levels from Th17 T cells.
- Male3_TH1
Expression levels from Th1 T cells.
- Male3_TFH
Expression levels from T follicular helper T cells.
- Male3_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Male3_TREG_MEM
Expression levels from memory regulatory T cells.
- Male3_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Male3_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Male3_M2
Expression levels from Non-classical Monocytes.
- Male3_NK
Expression levels from Natural Killer cells.
- Male4_MONOCYTES
Expression levels from Classical Monocytes.
- Male4_B_CELL_NAIVE
Expression levels from naive B cells.
- Male4_CD8_NAIVE
Expression levels from naive CD8 T cells
- Male4_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Male4_TH2
Expression levels from Th2 T cells.
- Male4_THSTAR
Expression levels from Th1/17 T cells.
- Male4_TH17
Expression levels from Th17 T cells.
- Male4_TH1
Expression levels from Th1 T cells.
- Male4_TFH
Expression levels from T follicular helper T cells.
- Male4_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Male4_TREG_MEM
Expression levels from memory regulatory T cells.
- Male4_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Male4_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Male4_M2
Expression levels from Non-classical Monocytes.
- Male4_NK
Expression levels from Natural Killer cells.
- Female1_MONOCYTES
Expression levels from Classical Monocytes.
- Female1_B_CELL_NAIVE
Expression levels from naive B cells.
- Female1_CD8_NAIVE
Expression levels from naive CD8 T cells
- Female1_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Female1_TH2
Expression levels from Th2 T cells.
- Female1_THSTAR
Expression levels from Th1/17 T cells.
- Female1_TH17
Expression levels from Th17 T cells.
- Female1_TH1
Expression levels from Th1 T cells.
- Female1_TFH
Expression levels from T follicular helper T cells.
- Female1_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Female1_TREG_MEM
Expression levels from memory regulatory T cells.
- Female1_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Female1_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Female1_M2
Expression levels from Non-classical Monocytes.
- Female1_NK
Expression levels from Natural Killer cells.
- Female2_MONOCYTES
Expression levels from Classical Monocytes.
- Female2_B_CELL_NAIVE
Expression levels from naive B cells.
- Female2_CD8_NAIVE
Expression levels from naive CD8 T cells
- Female2_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Female2_TH2
Expression levels from Th2 T cells.
- Female2_THSTAR
Expression levels from Th1/17 T cells.
- Female2_TH17
Expression levels from Th17 T cells.
- Female2_TH1
Expression levels from Th1 T cells.
- Female2_TFH
Expression levels from T follicular helper T cells.
- Female2_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Female2_TREG_MEM
Expression levels from memory regulatory T cells.
- Female2_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Female2_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Female2_M2
Expression levels from Non-classical Monocytes.
- Female2_NK
Expression levels from Natural Killer cells.
- Female3_MONOCYTES
Expression levels from Classical Monocytes.
- Female3_B_CELL_NAIVE
Expression levels from naive B cells.
- Female3_CD8_NAIVE
Expression levels from naive CD8 T cells
- Female3_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Female3_TH2
Expression levels from Th2 T cells.
- Female3_THSTAR
Expression levels from Th1/17 T cells.
- Female3_TH17
Expression levels from Th17 T cells.
- Female3_TH1
Expression levels from Th1 T cells.
- Female3_TFH
Expression levels from T follicular helper T cells.
- Female3_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Female3_TREG_MEM
Expression levels from memory regulatory T cells.
- Female3_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Female3_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Female3_M2
Expression levels from Non-classical Monocytes.
- Female3_NK
Expression levels from Natural Killer cells.
- Female4_MONOCYTES
Expression levels from Classical Monocytes.
- Female4_B_CELL_NAIVE
Expression levels from naive B cells.
- Female4_CD8_NAIVE
Expression levels from naive CD8 T cells
- Female4_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Female4_TH2
Expression levels from Th2 T cells.
- Female4_THSTAR
Expression levels from Th1/17 T cells.
- Female4_TH17
Expression levels from Th17 T cells.
- Female4_TH1
Expression levels from Th1 T cells.
- Female4_TFH
Expression levels from T follicular helper T cells.
- Female4_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Female4_TREG_MEM
Expression levels from memory regulatory T cells.
- Female4_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Female4_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Female4_M2
Expression levels from Non-classical Monocytes.
- Female4_NK
Expression levels from Natural Killer cells.
Source
The La Jolla Institute of Immunology - Database of Immune Cell eQTLs,
Expression, and Epigenomics. https://dice-database.org/
JasonPBennett/GECO documentation built on Aug. 30, 2021, 4:30 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source
Description
A sample RNA-seq dataset containing 4,000 genes and 8 individuals (4M, 4F), each with 15 immune-specific cell types present.
Usage
1 |
Format
A data frame with columns:
- Male1_MONOCYTES
Expression levels from Classical Monocytes.
- Male1_B_CELL_NAIVE
Expression levels from naive B cells.
- Male1_CD8_NAIVE
Expression levels from naive CD8 T cells
- Male1_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Male1_TH2
Expression levels from Th2 T cells.
- Male1_THSTAR
Expression levels from Th1/17 T cells.
- Male1_TH17
Expression levels from Th17 T cells.
- Male1_TH1
Expression levels from Th1 T cells.
- Male1_TFH
Expression levels from T follicular helper T cells.
- Male1_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Male1_TREG_MEM
Expression levels from memory regulatory T cells.
- Male1_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Male1_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Male1_M2
Expression levels from Non-classical Monocytes.
- Male1_NK
Expression levels from Natural Killer cells.
- Male2_MONOCYTES
Expression levels from Classical Monocytes.
- Male2_B_CELL_NAIVE
Expression levels from naive B cells.
- Male2_CD8_NAIVE
Expression levels from naive CD8 T cells
- Male2_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Male2_TH2
Expression levels from Th2 T cells.
- Male2_THSTAR
Expression levels from Th1/17 T cells.
- Male2_TH17
Expression levels from Th17 T cells.
- Male2_TH1
Expression levels from Th1 T cells.
- Male2_TFH
Expression levels from T follicular helper T cells.
- Male2_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Male2_TREG_MEM
Expression levels from memory regulatory T cells.
- Male2_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Male2_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Male2_M2
Expression levels from Non-classical Monocytes.
- Male2_NK
Expression levels from Natural Killer cells.
- Male3_MONOCYTES
Expression levels from Classical Monocytes.
- Male3_B_CELL_NAIVE
Expression levels from naive B cells.
- Male3_CD8_NAIVE
Expression levels from naive CD8 T cells
- Male3_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Male3_TH2
Expression levels from Th2 T cells.
- Male3_THSTAR
Expression levels from Th1/17 T cells.
- Male3_TH17
Expression levels from Th17 T cells.
- Male3_TH1
Expression levels from Th1 T cells.
- Male3_TFH
Expression levels from T follicular helper T cells.
- Male3_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Male3_TREG_MEM
Expression levels from memory regulatory T cells.
- Male3_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Male3_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Male3_M2
Expression levels from Non-classical Monocytes.
- Male3_NK
Expression levels from Natural Killer cells.
- Male4_MONOCYTES
Expression levels from Classical Monocytes.
- Male4_B_CELL_NAIVE
Expression levels from naive B cells.
- Male4_CD8_NAIVE
Expression levels from naive CD8 T cells
- Male4_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Male4_TH2
Expression levels from Th2 T cells.
- Male4_THSTAR
Expression levels from Th1/17 T cells.
- Male4_TH17
Expression levels from Th17 T cells.
- Male4_TH1
Expression levels from Th1 T cells.
- Male4_TFH
Expression levels from T follicular helper T cells.
- Male4_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Male4_TREG_MEM
Expression levels from memory regulatory T cells.
- Male4_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Male4_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Male4_M2
Expression levels from Non-classical Monocytes.
- Male4_NK
Expression levels from Natural Killer cells.
- Female1_MONOCYTES
Expression levels from Classical Monocytes.
- Female1_B_CELL_NAIVE
Expression levels from naive B cells.
- Female1_CD8_NAIVE
Expression levels from naive CD8 T cells
- Female1_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Female1_TH2
Expression levels from Th2 T cells.
- Female1_THSTAR
Expression levels from Th1/17 T cells.
- Female1_TH17
Expression levels from Th17 T cells.
- Female1_TH1
Expression levels from Th1 T cells.
- Female1_TFH
Expression levels from T follicular helper T cells.
- Female1_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Female1_TREG_MEM
Expression levels from memory regulatory T cells.
- Female1_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Female1_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Female1_M2
Expression levels from Non-classical Monocytes.
- Female1_NK
Expression levels from Natural Killer cells.
- Female2_MONOCYTES
Expression levels from Classical Monocytes.
- Female2_B_CELL_NAIVE
Expression levels from naive B cells.
- Female2_CD8_NAIVE
Expression levels from naive CD8 T cells
- Female2_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Female2_TH2
Expression levels from Th2 T cells.
- Female2_THSTAR
Expression levels from Th1/17 T cells.
- Female2_TH17
Expression levels from Th17 T cells.
- Female2_TH1
Expression levels from Th1 T cells.
- Female2_TFH
Expression levels from T follicular helper T cells.
- Female2_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Female2_TREG_MEM
Expression levels from memory regulatory T cells.
- Female2_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Female2_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Female2_M2
Expression levels from Non-classical Monocytes.
- Female2_NK
Expression levels from Natural Killer cells.
- Female3_MONOCYTES
Expression levels from Classical Monocytes.
- Female3_B_CELL_NAIVE
Expression levels from naive B cells.
- Female3_CD8_NAIVE
Expression levels from naive CD8 T cells
- Female3_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Female3_TH2
Expression levels from Th2 T cells.
- Female3_THSTAR
Expression levels from Th1/17 T cells.
- Female3_TH17
Expression levels from Th17 T cells.
- Female3_TH1
Expression levels from Th1 T cells.
- Female3_TFH
Expression levels from T follicular helper T cells.
- Female3_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Female3_TREG_MEM
Expression levels from memory regulatory T cells.
- Female3_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Female3_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Female3_M2
Expression levels from Non-classical Monocytes.
- Female3_NK
Expression levels from Natural Killer cells.
- Female4_MONOCYTES
Expression levels from Classical Monocytes.
- Female4_B_CELL_NAIVE
Expression levels from naive B cells.
- Female4_CD8_NAIVE
Expression levels from naive CD8 T cells
- Female4_CD8_STIM
Expression levels from stimulated CD8 T cells.
- Female4_TH2
Expression levels from Th2 T cells.
- Female4_THSTAR
Expression levels from Th1/17 T cells.
- Female4_TH17
Expression levels from Th17 T cells.
- Female4_TH1
Expression levels from Th1 T cells.
- Female4_TFH
Expression levels from T follicular helper T cells.
- Female4_TREG_NAIVE
Expression levels from naive regulatory T cells.
- Female4_TREG_MEM
Expression levels from memory regulatory T cells.
- Female4_CD4_NAIVE
Expression levels from naive CD4 T cells.
- Female4_CD4_STIM
Expression levels from stimulated CD4 T cells.
- Female4_M2
Expression levels from Non-classical Monocytes.
- Female4_NK
Expression levels from Natural Killer cells.
Source
The La Jolla Institute of Immunology - Database of Immune Cell eQTLs, Expression, and Epigenomics. https://dice-database.org/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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