Files in Jasondd66/covid_19bioMarkers
Performs common bioinformatics analyses
DESCRIPTION
NAMESPACE
R/alexa_functions.R
R/biomarkerDiscoveryUI.R
R/biomarker_discovery_analysis_module.R
R/common_functions.R
R/covid19.R
R/dataUploadUI.R
R/data_upload_module.R
R/dea_helperFunctions.R
R/dea_module.R
R/dotplot_module.R
R/dynamodb.R
R/eda_helperFunctions.R
R/eda_module.R
R/heartFailure.R
R/metadata_helperFunctions.R
R/metadata_module.R
R/metadata_ui.R
R/pathwayDB.R
R/pvalueHeatmap_module.R
R/report_module.R
R/splom_module.R
R/startApp.R
R/ui_elements.R
R/variable_plot_module.R
README.Rmd
README.md
data/covid19.rda
data/heartFailure.rda
data/pathwayDB.rda
inst/app/global.R
inst/app/report.Rmd
inst/app/server.R
inst/app/ui.R
inst/app/www/app-architecture.png
inst/app/www/styles.css
inst/extdata/covid19/GSE147507_RawReadCounts.tsv
inst/extdata/covid19/covid19.Rmd
inst/extdata/covid19/covid19.md
inst/extdata/figures/logo.png
inst/extdata/figures/logo.pptx
inst/extdata/heartFailure/cells.tsv
inst/extdata/heartFailure/clinical.tsv
inst/extdata/heartFailure/heartFailure.Rmd
inst/extdata/heartFailure/heartFailure.md
inst/extdata/heartFailure/holter.tsv
inst/extdata/heartFailure/mrna.tsv
inst/extdata/heartFailure/proteins.tsv
inst/extdata/pathwayDB/data/BioCarta_2016.csv
inst/extdata/pathwayDB/data/KEGG_2019_Human.csv
inst/extdata/pathwayDB/data/Reactome_2016.csv
inst/extdata/pathwayDB/data/WikiPathways_2019_Human.csv
inst/extdata/pathwayDB/pathways.Rmd
inst/extdata/pathwayDB/pathways.md
inst/extdata/pathwayDB/pathways_files/figure-gfm/unnamed-chunk-2-1.png
inst/extdata/pathwayDB/pathways_files/figure-gfm/unnamed-chunk-3-1.png
inst/extdata/pathwayDB/pathways_files/figure-gfm/unnamed-chunk-4-1.png
inst/extdata/pathwayDB/pathways_files/figure-html/unnamed-chunk-2-1.png
inst/extdata/pathwayDB/pathways_files/figure-html/unnamed-chunk-3-1.png
inst/extdata/pathwayDB/pathways_files/figure-html/unnamed-chunk-4-1.png
man/covid19.Rd
man/customDownloadButton.Rd
man/heartFailure.Rd
man/pathwayDB.Rd
man/startApplication.Rd
omicsBioAnalytics.Rproj
tests/manual_tests.txt
tests/testthat.R
tests/testthat/test-diffexp.R
tests/testthat/test-lintr.R
