plot_eems: plot_eems function Invokes the reemsplots2 function...

In JeffWeinell/misc.wrappers: Miscellaneous Wrapper Functions for Spatial Population Genomics

plot_eems function Invokes the reemsplots2 function make_eems_plots, with additional functionality such as adding island borders and points showing individual coordinates..

Description

plot_eems function

Invokes the reemsplots2 function make_eems_plots, with additional functionality such as adding island borders and points showing individual coordinates..

Usage

plot_eems(
  xdir,
  plot.coords = T,
  plot.geography = T,
  mask.oceans = T,
  include.out = c("pdf", "raster"),
  usechains = NULL
)

Arguments

xdir	Character string to directory of a particular mcmc chain, or, to a directory containing subdirectories "/mcmc/chain*".
plot.coords	Whether or not to overlay the sample coordinates on EEMS maps. Default TRUE.
plot.geography	Whether or not to overlay country borders on EEMS maps. Default TRUE.
mask.oceans	Whether or not mask oceans on EEMS maps. Default TRUE.
include.out	Character string vector indicating the type of output files to generate.
usechains	Integer vector specifying which chains to make plots for; Default is NULL, in which case plots are made for all chains.

Value

List of ggplots

JeffWeinell/misc.wrappers documentation built on Sept. 20, 2023, 12:42 p.m.