rsbatch: sbatch setup and submit Creates slurm sbatch submission...

In JeffWeinell/misc.wrappers: Miscellaneous Wrapper Functions for Spatial Population Genomics

sbatch setup and submit Creates slurm sbatch submission string, and optionally submits the job using system

Description

sbatch setup and submit

Creates slurm sbatch submission string, and optionally submits the job using system

Usage

rsbatch(
  sh.path,
  partition = NA,
  nodes = 1,
  ntasksPerNode = 1,
  memGb = 50,
  time = c(0, 6, 0, 0),
  submit = FALSE,
  intern = FALSE
)

Arguments

sh.path	Character string with path to bash script
partition	Character string with name of partition to submit the job to. Passed to sbatch argument '–partition'. Default NA.
nodes	Number of nodes to split the job across. Default 1.
ntasksPerNode	Number of tasks (cores) to use per node. Default 1.
memGb	Total amount of memory to allocate for the job. Default 50Gb.
time	Numerical vector with length 4, with the number of days, hours, minutes, and seconds, respectively, to allocate for the job.
submit	Logical with whether or not to submit the jobs to the cluster.

Value

Either vector of character strings that can be piped to system, or NULL

JeffWeinell/misc.wrappers documentation built on Sept. 20, 2023, 12:42 p.m.