summarize_VCFs: summarize_VCFs Same as 'summarize_stacks', except the full...

In JeffWeinell/misc.wrappers: Miscellaneous Wrapper Functions for Spatial Population Genomics

summarize_VCFs Same as 'summarize_stacks', except the full paths to input VCFs and an output directory are supplied as arguments.

Description

summarize_VCFs

Same as 'summarize_stacks', except the full paths to input VCFs and an output directory are supplied as arguments.

Usage

summarize_VCFs(
  VCF.paths,
  save.as,
  popmap.path = NULL,
  include.out = c("total", "persite")
)

Arguments

VCF.paths	Character string vector to one or more input VCF files.
save.as	Path to location where output stats table should be saved. If NULL, the the table is not saved.
popmap.path	Character string to population map. If NULL, all individuals in are assigned to the same 'population'.
include.out	Character string vector indicating which output files to generate.

Value

data frame(s) with basic stats

JeffWeinell/misc.wrappers documentation built on Sept. 20, 2023, 12:42 p.m.