transitionModels: Generate transition models Makes a list of all possible model...

In JeffWeinell/misc.wrappers: Miscellaneous Wrapper Functions for Spatial Population Genomics

Generate transition models Makes a list of all possible model schemes for transitions between a set of states. The returned object can be passed to the function fitmodels

Description

Generate transition models

Makes a list of all possible model schemes for transitions between a set of states. The returned object can be passed to the function fitmodels

Usage

transitionModels(states, include.asymmetric = TRUE, constraint = NULL)

Arguments

states	A vector with values representing character states.
include.asymmetric	Whether or not to include assymetric rate models in the list of returned models. Default TRUE; (FALSE not yet implemented)
constraint	A numeric matrix with values 1 and/or 0, indicating whether or not specific transition types should be allowed or restricted, respectively. The default value of NULL allows all model types in the returned list of models. Providing a constraint matrix filters the set of models to only those that satisfy the constraint.

Value

A list of transition matrices, for all possible partitions of pairwise transitions into parameters describing transitions.

JeffWeinell/misc.wrappers documentation built on Sept. 20, 2023, 12:42 p.m.