vcf2fastStructure: Convert VCF file/object to fastStructure input file (for SNP...
In JeffWeinell/misc.wrappers: Miscellaneous Wrapper Functions for Spatial Population Genomics
View source: R/run_fastStructure.R
vcf2fastStructure R Documentation
Convert VCF file/object to fastStructure input file (for SNP data)
Converts a VCF file or vcfR object with SNP data into a fastStructure file.
Description
Convert VCF file/object to fastStructure input file (for SNP data)
Converts a VCF file or vcfR object with SNP data into a fastStructure file.
Usage
vcf2fastStructure(vcf, IndvNames = TRUE, out = NULL, OtherData = NULL)
Arguments
vcf
Character string with path to input VCF, or an object of class vcfR.
IndvNames
Logical indicating if the first column of the output file should include the names of individuals. Default TRUE.
out
Path where output file should be written.
OtherData
NULL (the default) or a matrix with up to five (if IndvNames TRUE) or six (if IndvNames FALSE) columns of metadata. If non-NULL, the number of rows must equal number of individuals in the VCF.
Value
Character string with value of 'out'.
JeffWeinell/misc.wrappers documentation built on Sept. 20, 2023, 12:42 p.m.
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View source: R/run_fastStructure.R
| vcf2fastStructure | R Documentation |
Convert VCF file/object to fastStructure input file (for SNP data) Converts a VCF file or vcfR object with SNP data into a fastStructure file.
Description
Convert VCF file/object to fastStructure input file (for SNP data)
Converts a VCF file or vcfR object with SNP data into a fastStructure file.
Usage
vcf2fastStructure(vcf, IndvNames = TRUE, out = NULL, OtherData = NULL)
Arguments
vcf |
Character string with path to input VCF, or an object of class vcfR. |
IndvNames |
Logical indicating if the first column of the output file should include the names of individuals. Default TRUE. |
out |
Path where output file should be written. |
OtherData |
NULL (the default) or a matrix with up to five (if IndvNames TRUE) or six (if IndvNames FALSE) columns of metadata. If non-NULL, the number of rows must equal number of individuals in the VCF. |
Value
Character string with value of 'out'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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