vcfR2lfmm: Reads a VCF object (including those not usually compatible...
In JeffWeinell/misc.wrappers: Miscellaneous Wrapper Functions for Spatial Population Genomics
vcfR2lfmm R Documentation
Reads a VCF object (including those not usually compatible with LEA) and returns a genotypic matrix equivalent to the lfmm-format used by LEA
The object returned by vcfR2lfmm can be used as input in the LEA function tess3.
Optionally supply a character string with path where lfmm object will be saved
This function is used in the function runtess
Description
Reads a VCF object (including those not usually compatible with LEA) and returns a genotypic matrix equivalent to the lfmm-format used by LEA
The object returned by vcfR2lfmm can be used as input in the LEA function tess3.
Optionally supply a character string with path where lfmm object will be saved
This function is used in the function runtess
Usage
vcfR2lfmm(vcf, out = NULL)
Arguments
vcf
Character string with path to input VCF file.
out
Character string with path where output lfmm file should be saved. Default is NULL.
Value
Matrix with genotypes in lfmm format
JeffWeinell/misc.wrappers documentation built on Sept. 20, 2023, 12:42 p.m.
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| vcfR2lfmm | R Documentation |
Reads a VCF object (including those not usually compatible with LEA) and returns a genotypic matrix equivalent to the lfmm-format used by LEA The object returned by vcfR2lfmm can be used as input in the LEA function tess3. Optionally supply a character string with path where lfmm object will be saved This function is used in the function runtess
Description
Reads a VCF object (including those not usually compatible with LEA) and returns a genotypic matrix equivalent to the lfmm-format used by LEA
The object returned by vcfR2lfmm can be used as input in the LEA function tess3. Optionally supply a character string with path where lfmm object will be saved This function is used in the function runtess
Usage
vcfR2lfmm(vcf, out = NULL)
Arguments
vcf |
Character string with path to input VCF file. |
out |
Character string with path where output lfmm file should be saved. Default is NULL. |
Value
Matrix with genotypes in lfmm format
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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