normalizeHM: Histogram matching intensity normalization.

In Jfortin1/RAVEL: Removal of Artificial Voxel Effect by Linear Regression

Histogram matching intensity normalization.

Description

Histogram mathing intensity normalization.

Usage

normalizeHM(
  input.files,
  output.files = NULL,
  brain.mask = NULL,
  type = c("T1", "T2", "FLAIR", "PD"),
  writeToDisk = FALSE,
  returnMatrix = TRUE,
  verbose = TRUE
)

Arguments

input.files	Vector of filenames for the input images. Must be NIfTI files.
output.files	Optional vector of filenames for the output images. By default, will be the input.files with suffix "HM".
brain.mask	Filename for the brain binary mask specifying the template space brain. Must be a NIfTI file.
type	What modality is used? Should be one of T1, T2, FLAIR or PD.
writeToDisk	Should the scans be saved to the disk? FALSE by default.
returnMatrix	Should the matrix of intensities be returned? FALSE by default.
verbose	Should messages be printed?

Value

if returnMatrix is FALSE, no value returned, but Histogram-matching-normalized images are saved. If returnMatrix is TRUE, Histogram-matching-normalized images are saved and a matrix of normalized intensities is returned.

Author(s)

Jean-Philippe Fortin

Jfortin1/RAVEL documentation built on Sept. 14, 2023, 10:33 a.m.