normalizeWS | R Documentation |
WhiteStripe intensity normalization.
normalizeWS(
input.files,
output.files = NULL,
brain.mask = NULL,
stripped = TRUE,
WhiteStripe_Type = c("T1", "T2", "FLAIR"),
writeToDisk = FALSE,
returnMatrix = TRUE,
verbose = TRUE,
...
)
input.files |
Vector of filenames for the input images. Must be NIfTI files. |
output.files |
Optional vector of filenames for the output images. By
default, will be the |
brain.mask |
Filename for the brain binary mask specifying the template space brain. Must be a NIfTI file. |
stripped |
Is the image skull stripped? TRUE by default. |
WhiteStripe_Type |
What modality is used for WhiteStripe? Should be one of T1, T2 or FLAIR. |
writeToDisk |
Should the scans be saved to the disk? FALSE by default. |
returnMatrix |
Should the matrix of intensities be returned? FALSE by default. |
verbose |
Should messages be printed? |
... |
additional arguments to pass to |
if returnMatrix
is FALSE
, no value returned, but
WhiteStripe-normalized images are saved. If returnMatrix
is
TRUE
, WhiteStripe-normalized images are saved and a matrix of
normalized intensities is returned.
Jean-Philippe Fortin
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