API for Jfortin1/shinyMethyl
Interactive visualization for Illumina methylation arrays
| Global functions | |
|---|---|
| .checkSex | Source code |
| .shinyCombine | Source code |
| addHoverDensity | Source code |
| addHoverPoints | Source code |
| addHoverQC | Source code |
| buildColors | Source code |
| combine | Man page |
| combine,shinyMethylSet,shinyMethylSet-method | Man page |
| densitiesPlot | Source code |
| getBeta | Man page |
| getBeta,shinyMethylSet-method | Man page |
| getCN | Man page |
| getCN,shinyMethylSet-method | Man page |
| getGreenControls | Man page Source code |
| getM | Man page |
| getM,shinyMethylSet-method | Man page |
| getMeth | Man page |
| getMeth,shinyMethylSet-method | Man page |
| getPCA | Man page Source code |
| getRedControls | Man page Source code |
| getUnmeth | Man page |
| getUnmeth,shinyMethylSet-method | Man page |
| orderByName | Man page Source code |
| pData | Man page |
| pData,shinyMethylSet-method | Man page |
| plotDesign450k | Source code |
| plotDiscrepancyGenders | Source code |
| plotInternalControls | Source code |
| plotLegendDesign450k | Source code |
| plotPCA | Source code |
| plotPlate | Source code |
| plotPredictedGender | Source code |
| plotQC | Source code |
| plotRow | Source code |
| returnControlStat | Source code |
| returnGivenGender | Source code |
| returnPredictedGender | Source code |
| runShinyMethyl | Man page Source code |
| sampleNames | Man page |
| sampleNames,shinyMethylSet-method | Man page |
| server.shinyMethyl | Source code |
| shinyMethylSet | Man page Source code |
| shinyMethylSet-class | Man page |
| shinySummarize | Man page |
| shinySummarize,GenomicRatioSet-method | Man page |
| shinySummarize,RGChannelSet-method | Man page |
| shinySummarize-methods | Man page |
| show,shinyMethylSet-method | Man page |
| ui.shinyMethyl | Source code |
