runShinyMethyl: Run the interactive shinyMethyl session

In Jfortin1/shinyMethyl: Interactive visualization for Illumina methylation arrays

Run the interactive shinyMethyl session

Description

Function to run the interactive shinyMethyl session from a shinyMethylSet object.

Usage

runShinyMethyl(shinyMethylSet1, shinyMethylSet2 = NULL)

Arguments

shinyMethylSet1	shinyMethylSet that must be extracted from an RGChannelSet object.
shinyMethylSet2	Optional shinyMethylSet that must be extracted from a GenomicRatioSet.

Value

No value returned. Instead the shinyMethyl interactive session is launched.

Author(s)

Jean-Philippe Fortin

See Also

shinyMethylSet

Examples

if (interactive()){
library(minfi)
library(minfiData)
baseDir <- system.file("extdata", package = "minfiData")
targets <- read.metharray.sheet(baseDir)
targets$Sample_Plate <- substr(targets$Slide,1,7)
RGSet <- read.metharray.exp(targets=targets)
summarized.data <- shinySummarize(RGSet)
runShinyMethyl(summarized.data)
}

Jfortin1/shinyMethyl documentation built on Jan. 31, 2024, 1:01 p.m.