shinySummarize-methods: Summarizing a large 450K experiment into a shinyMethylSet

In Jfortin1/shinyMethyl: Interactive visualization for Illumina methylation arrays

Summarizing a large 450K experiment into a shinyMethylSet

Description

Summarizing methylation data from a RGChannelSet or GenomicRatioSet into a shinyMethylSet needed to launch the interactive interface of shinyMethyl. That works for both the 450k and EPIC arrays.

Usage

## S4 method for signature 'RGChannelSet'
shinySummarize(object)
## S4 method for signature 'GenomicRatioSet'
shinySummarize(object)

Arguments

object

Either a RGChannelSet or a GenomicRatioSet.

Details

Either a RGChannelSet is transformed into a shinyMethylSet, or a GenomicRatioSet is transformed to a shinyMethylSet

Author(s)

Jean-Philippe Fortin

See Also

shinyMethylSet for the output object and RGChannelSet or GenomicRatioSet for the input object.

Examples

if (require(minfiData)){
  library(minfiData)
  summarized.data <- shinySummarize(RGsetEx)
}

Jfortin1/shinyMethyl documentation built on Jan. 31, 2024, 1:01 p.m.