Files in Jfortin1/shinyMethyl
Interactive visualization for Illumina methylation arrays
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/globals.R
R/plotControlProbes.R
R/plotDensities.R
R/plotDesign.R
R/plotPCA.R
R/plotQC.R
R/plotSex.R
R/runShinyMethyl.R
R/server.R
R/shinyMethylSet.R
R/shinySummarize.R
R/ui.R
R/utils.R
README.md
inst/CITATION
inst/NEWS.Rd
man/runShinyMethyl.Rd
man/shinyMethylSet-class.Rd
man/shinySummarize-methods.Rd
tests/testthat.R
tests/testthat/objects/beta.IGrn.rds
tests/testthat/objects/beta.II.rds
tests/testthat/objects/beta.IRed.rds
tests/testthat/objects/beta.X.rds
tests/testthat/objects/beta.Y.rds
tests/testthat/objects/cn.IGrn.rds
tests/testthat/objects/cn.II.rds
tests/testthat/objects/cn.IRed.rds
tests/testthat/objects/cn.X.rds
tests/testthat/objects/cn.Y.rds
tests/testthat/objects/green.BISULFITE_CONVERSION_I.rds
tests/testthat/objects/green.BISULFITE_CONVERSION_II.rds
tests/testthat/objects/green.EXTENSION.rds
tests/testthat/objects/green.HYBRIDIZATION.rds
tests/testthat/objects/green.NEGATIVE.rds
tests/testthat/objects/green.NON-POLYMORPHIC.rds
tests/testthat/objects/green.NORM_A.rds
tests/testthat/objects/green.NORM_C.rds
tests/testthat/objects/green.NORM_G.rds
tests/testthat/objects/green.NORM_T.rds
tests/testthat/objects/green.SPECIFICITY_I.rds
tests/testthat/objects/green.SPECIFICITY_II.rds
tests/testthat/objects/green.STAINING.rds
tests/testthat/objects/green.TARGET_REMOVAL.rds
tests/testthat/objects/m.IGrn.rds
tests/testthat/objects/m.II.rds
tests/testthat/objects/m.IRed.rds
tests/testthat/objects/m.X.rds
tests/testthat/objects/m.Y.rds
tests/testthat/objects/meth.IGrn.rds
tests/testthat/objects/meth.II.rds
tests/testthat/objects/meth.IRed.rds
tests/testthat/objects/meth.X.rds
tests/testthat/objects/meth.Y.rds
tests/testthat/objects/red.BISULFITE_CONVERSION_I.rds
tests/testthat/objects/red.BISULFITE_CONVERSION_II.rds
tests/testthat/objects/red.EXTENSION.rds
tests/testthat/objects/red.HYBRIDIZATION.rds
tests/testthat/objects/red.NEGATIVE.rds
tests/testthat/objects/red.NON-POLYMORPHIC.rds
tests/testthat/objects/red.NORM_A.rds
tests/testthat/objects/red.NORM_C.rds
tests/testthat/objects/red.NORM_G.rds
tests/testthat/objects/red.NORM_T.rds
tests/testthat/objects/red.SPECIFICITY_I.rds
tests/testthat/objects/red.SPECIFICITY_II.rds
tests/testthat/objects/red.STAINING.rds
tests/testthat/objects/red.TARGET_REMOVAL.rds
tests/testthat/objects/unmeth.IGrn.rds
tests/testthat/objects/unmeth.II.rds
tests/testthat/objects/unmeth.IRed.rds
tests/testthat/objects/unmeth.X.rds
tests/testthat/objects/unmeth.Y.rds
tests/testthat/test-shinySummarize.R
vignettes/figures/All.png
vignettes/figures/BothPlate.jpg
vignettes/figures/BothPlate.pdf
vignettes/figures/BothStatus.jpg
vignettes/figures/BothStatus.pdf
vignettes/figures/screenshot_design.png
vignettes/figures/screenshot_designbias.png
vignettes/figures/screenshot_pca.png
vignettes/figures/screenshot_qc.png
vignettes/figures/screenshot_sexprediction.png
vignettes/shinyMethyl.Rmd
vignettes/shinyMethyl.bib
