README.md
In Jialab-UCR/IIIandMe: An Algorithm for Chromosome-scale Haplotype Determination Using Genome-wide Variants of Three Haploid Reproductive Cells
IIIandMe: An Algorithm for Chromosome-scale Haplotype Determination Using Genome-wide Variants of Three Haploid Reproductive Cells
Introduction
Our recent algorithm, Hapi, infers chromosome-scale haplotypes using genomic data of a small number of single gametes. Its advanced version, IIIandMe, is proposed here to achieve comparable phasing accuracy as few as three gametes, pushing the analysis to its limit. he new method is validated with simulation and a citrus gamete dataset. The rapid advancement in genotyping technologies promises a broad application of IIIandMe in disclosing important genetic information.
Installation from Github
### Install dependencies ahead
install.packages('devtools')
devtools::install_github('Jialab-UCR/IIIandMe')
Package Manual
The manual of IIIandMe: IIIandMe manual
Jialab-UCR/IIIandMe documentation built on Jan. 5, 2023, 1:32 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
IIIandMe: An Algorithm for Chromosome-scale Haplotype Determination Using Genome-wide Variants of Three Haploid Reproductive Cells
Introduction
Our recent algorithm, Hapi, infers chromosome-scale haplotypes using genomic data of a small number of single gametes. Its advanced version, IIIandMe, is proposed here to achieve comparable phasing accuracy as few as three gametes, pushing the analysis to its limit. he new method is validated with simulation and a citrus gamete dataset. The rapid advancement in genotyping technologies promises a broad application of IIIandMe in disclosing important genetic information.
Installation from Github
### Install dependencies ahead
install.packages('devtools')
devtools::install_github('Jialab-UCR/IIIandMe')
Package Manual
The manual of IIIandMe: IIIandMe manual
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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