PlotCo: Plotting crossover positions

In Jialab-UCR/IIIandMe: An Algorithm for Chromosome-scale Haplotype Determination Using Genome-wide Variants of Three Haploid Reproductive Cells

Plotting crossover positions

Description

Plotting crossover positions

Usage

PlotCo(
  sample,
  chr = "chr9",
  co,
  scale = "pos",
  export.options = F,
  labels = T,
  label_font = 12,
  label_angle = 0
)

Arguments

sample	Pollen raw data
chr	chromosome name
co	crossover table
scale	data locus or real position
labels	annotate label or not
label_font	label font
label_angle	label position

Value

crossover plot

Examples

library(IIIandMe)
input<- PreProcessing(sample)
res<- HapCo(input, 5)
vote<- VoteCount(sample, input, res, 5)
PlotCo(sample, chr='chr9', co=vote[[2]], export.options= T)

Jialab-UCR/IIIandMe documentation built on Jan. 5, 2023, 1:32 a.m.