EStep: E step of the EM algorithm: Calculate the expectation of Q...
In JiayiJi/iProMix: Cell-Type Specific Association Analysis for Bulk Profiling Data
Description
Usage
Arguments
Value
Description
E step of the EM algorithm: Calculate the expectation of Q function given parameters
Usage
1
Arguments
u
The combined data of (y, x)
pi
The proportion of cell type 1 in all cells
mu1
The estimated (y,x) mean function of cell type 1
mu2
The estimated (y,x) mean function of cell type 2
var1
The estimated (y,x) variance of cell type 1
var2
The estimated (y,x) variance of cell type 2
Value
A list of the 4 elements
Eu1:
The expected value in cell type 1 given the observed (y, x) at the tissue level given input parameters
Eu2:
The expected value in cell type 2 given the observed (y, x) at the tissue level given input parameters
Evar1:
The expected variance-covariance matrix in cell type 1 given the observed (y, x) at the tissue level given input parameters
Evar2:
The expected variance-covariance matrix in cell type 2 given the observed (y, x) at the tissue level given input parameters
JiayiJi/iProMix documentation built on Dec. 18, 2021, 1:30 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
E step of the EM algorithm: Calculate the expectation of Q function given parameters
Usage
1 |
Arguments
u |
The combined data of (y, x) |
pi |
The proportion of cell type 1 in all cells |
mu1 |
The estimated (y,x) mean function of cell type 1 |
mu2 |
The estimated (y,x) mean function of cell type 2 |
var1 |
The estimated (y,x) variance of cell type 1 |
var2 |
The estimated (y,x) variance of cell type 2 |
Value
A list of the 4 elements
Eu1: |
The expected value in cell type 1 given the observed (y, x) at the tissue level given input parameters |
Eu2: |
The expected value in cell type 2 given the observed (y, x) at the tissue level given input parameters |
Evar1: |
The expected variance-covariance matrix in cell type 1 given the observed (y, x) at the tissue level given input parameters |
Evar2: |
The expected variance-covariance matrix in cell type 2 given the observed (y, x) at the tissue level given input parameters |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.