UniD.intctl: Checking quality of internal control probes

In JieYang031/UniD: Unified Diagnostic Platform for Gliomas

Description

Used to check the quality of internal control probes and return a data frame which includes whether samples have failed on different categories of internal controls

Usage

UniD.intctl(loading = loading, dataDir, outDir, arrayType, sampleType, write)

Arguments

loading	List generated from the UniD.load()
dataDir	directory where raw data stored
outDir	directory where output data should be saved if write = T
arrayType	the platform which raw data generated, can be "450k" or "EPIC"
sampleType	Indicate the input data are "FFPE" or "other"
write	whether the output should be saved, highly recommended

Value

a data frame with quality checking results for internal control probes

Examples

## Not run: 
samQC <- UniD.intctl(loading = loading, dataDir = "~/Desktop/IDAT/",
outDir = "~/Desktop/output/", arrayType = "450k", sampleType = "FFPE",
write = T)

samQC <- UniD.intctl(loading = loading, dataDir = "~/Desktop/IDAT/",
outDir = NULL, arrayType = "EPIC", sampleType = "other", write = F)

## End(Not run)

JieYang031/UniD documentation built on May 5, 2021, 5:16 p.m.