Files in JimSkinner/toftools
A set of tools for dealing with ToF data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/__imports.R
R/analyse.R
R/crossvalidate.R
R/drop-nearly-all-zero.R
R/gc-ims.R
R/get-hyperparameters.R
R/load-data.R
R/plot-gc-ims.R
README.md
data-raw/coeliac_area.txt
data-raw/coeliac_height.txt
data-raw/create-data.R
data-raw/gc ims/190304_090223_B131_1_Crop.csv
data-raw/gc ims/190313_083226_B132_1_Crop.csv
data-raw/gc ims/190325_093009_B134_1_Crop.csv
data-raw/gc ims/190328_143142_B135_1_Crop.csv
data-raw/gc ims/190329_101025_B136_1_Crop.csv
data-raw/gc ims/190401_094038_B137_1_Crop.csv
data-raw/gc ims/190402_094139_B138_1_Crop.csv
data-raw/gc ims/190426_134956_B139_1_Crop.csv
data-raw/gc ims/190501_113643_B140_1_Crop.csv
data-raw/gc ims/190508_093251_B141_1_Crop.csv
data-raw/gc ims/HC_190212_102600_B122_1_Crop.csv
data-raw/gc ims/HC_190212_112253_B123_1_Crop.csv
data-raw/gc ims/HC_190214_101613_B124_1_Crop.csv
data-raw/gc ims/HC_190215_142605_B125_1_Crop.csv
data-raw/gc ims/HC_190219_105517_B126_1_Crop.csv
data-raw/gc ims/HC_190220_112656_B129_1_Crop.csv
data-raw/gc ims/HC_190225_091714_B127_1_Crop.csv
data-raw/gc ims/HC_190225_114951_B130_1_Crop.csv
data-raw/gc ims/HC_190228_101917_B128_1_Crop.csv
data-raw/gc ims/HC_190321_112336_B133_1_Crop.csv
data-raw/pigs.txt
data-raw/sepsis_area.txt
data/coeliac_area.rda
data/coeliac_height.rda
data/pigs.rda
inst/Rmd/analysis-template-gcims.Rmd
inst/Rmd/analysis-template.Rmd
man/analyse.Rd
man/analyse_GCIMS.Rd
man/analyse_dir.Rd
man/crossvalidate.Rd
man/crossvalidation_feature_importance.Rd
man/crossvalidation_metrics.Rd
man/crossvalidation_predictive_probabilities.Rd
man/crossvalidation_roc.Rd
man/drop_nearly_all_zero.Rd
man/extract_labels.Rd
man/load_tof.Rd
man/pipe.Rd
man/plot_features.Rd
man/plot_gcims.Rd
man/vec_to_mat.Rd
man/vec_to_tbl.Rd
tests/testthat.R
tests/testthat/helper-load-pigs-subset.R
tests/testthat/test-crossvalidate.R
tests/testthat/test-drop-nearly-all-zero.R
tests/testthat/test-end-to-end.R
tests/testthat/test-load-tof.R
tests/testthat/test-metrics.R
toftools.Rproj
