plot_gcims: Plot one or more GC-IMS matrices

Description Usage Arguments Value

View source: R/plot-gc-ims.R

Description

Plot one or more GC-IMS matrices

Usage

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plot_gcims(gcims, names = character(0), subsample = 1,
  max_signal = Inf, nrow = NULL, ncol = NULL,
  ims_transformation = "identity")

Arguments

gcims

A 'gcims' matrix, or a list of such matrices

names

optional character vector to give titles when plotting multiple matrices

subsample

(integer) Sub-sample 1-in-‘subsample’ pixels

max_signal

maximum signal plotted (higher vals are capped)

nrow

number of rows when plotting multiple matrices

ncol

number of cols when plotting multiple matrices

ims_transformation

optional transformation to apply (passed to scale fill 'trans' argument). "log1p" is useful.

Value

ggplot object plotting the matrices


JimSkinner/toftools documentation built on Oct. 30, 2019, 7:55 p.m.