data.trans: Initialize parameters
In JingXieMIZZOU/hmmASE: Detection of Differentially Allelic Expressed Regions (DAERs) by a Bayesian Hidden Markov Model
Description
Usage
Arguments
Value
Description
A function to find the initial value for the parameters in Bayesian HMM model.
Usage
1
Arguments
data
A dataframe returned by data.prep function.
Value
A list contains the following elements:
- inputHMM
a dataframe with 5 columns, i.e., SNP indexes, genomic position of each SNP, the logit transformation of ASE ratioes for two groups, and the distance between two adjecent SNPs.
- initial
a list contain the initial values of parameters in the Bayesian HMM model.
JingXieMIZZOU/hmmASE documentation built on Dec. 31, 2019, 12:52 a.m.
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Description Usage Arguments Value
Description
A function to find the initial value for the parameters in Bayesian HMM model.
Usage
1 |
Arguments
data |
A |
Value
A list contains the following elements:
- inputHMM
a
dataframewith 5 columns, i.e., SNP indexes, genomic position of each SNP, the logit transformation of ASE ratioes for two groups, and the distance between two adjecent SNPs.- initial
a
listcontain the initial values of parameters in the Bayesian HMM model.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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