cytof_clusterMtrx: Expression values by cluster
In JinmiaoChenLab/cytofkit: cytofkit: an integrated mass cytometry data analysis pipeline
Description
Usage
Arguments
Value
Examples
View source: R/cytof_postProcess.R
Description
Generate a matrix of expression values for cells in a cluster
Usage
1
cytof_clusterMtrx(analysis_results, clusterMethod = NULL, cluster)
Arguments
analysis_results
analysis_results output of cytofkit to extract expression values from.
clusterMethod
The cluster method of interest. If none is selected, the first one will be used.
cluster
The cluster of interest.
Value
A data table with marker expression values of cells in a given cluster
Examples
1
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3
4
5
dir <- system.file('extdata',package='cytofkit')
file <- list.files(dir ,pattern='.RData$', full=TRUE)
load(file)
cluster2_table <- cytof_clusterMtrx(analysis_results, "Rphenograph", 2)
JinmiaoChenLab/cytofkit documentation built on Dec. 20, 2020, 8:52 p.m.
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Description Usage Arguments Value Examples
View source: R/cytof_postProcess.R
Description
Generate a matrix of expression values for cells in a cluster
Usage
1 | cytof_clusterMtrx(analysis_results, clusterMethod = NULL, cluster)
|
Arguments
analysis_results |
analysis_results output of cytofkit to extract expression values from. |
clusterMethod |
The cluster method of interest. If none is selected, the first one will be used. |
cluster |
The cluster of interest. |
Value
A data table with marker expression values of cells in a given cluster
Examples
1 2 3 4 5 |
dir <- system.file('extdata',package='cytofkit')
file <- list.files(dir ,pattern='.RData$', full=TRUE)
load(file)
cluster2_table <- cytof_clusterMtrx(analysis_results, "Rphenograph", 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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