countMut: Returns gene name and frequency of each gene types
In Jiyun1201/CANMutVisual: Analyze and Visualize Cancer Mutation Data
Description
Usage
Arguments
Value
Examples
Description
counMut function uses cosImport function in cosImport.R file to read from
cosmic file and uses that dataframe to extract IDsymbol column and return the
occurrence frequency of each gene types.
Usage
1
countMut(mutFile, hgncFile)
Arguments
mutFile
A .tsv file containing COSMIC point mutations
hgncFile
A .tsv file with complete approved human gene nomenclature IDs
Value
Returns dataframe with gene names and frequency.
Examples
1
2
3
# Using data files available in the package: "MutantData.tsv" and "HGNC.tsv"
# countMut("Data/MutantData.tsv", "Data/HGNC.tsv")
Jiyun1201/CANMutVisual documentation built on Dec. 18, 2021, 1:38 a.m.
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Description Usage Arguments Value Examples
Description
counMut function uses cosImport function in cosImport.R file to read from cosmic file and uses that dataframe to extract IDsymbol column and return the occurrence frequency of each gene types.
Usage
1 | countMut(mutFile, hgncFile)
|
Arguments
mutFile |
A .tsv file containing COSMIC point mutations |
hgncFile |
A .tsv file with complete approved human gene nomenclature IDs |
Value
Returns dataframe with gene names and frequency.
Examples
1 2 3 | # Using data files available in the package: "MutantData.tsv" and "HGNC.tsv"
# countMut("Data/MutantData.tsv", "Data/HGNC.tsv")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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