plot_cds: Returns barplot of mutation (cds) occurences

In Jiyun1201/CANMutVisual: Analyze and Visualize Cancer Mutation Data

Description

plot_cds function uses mut_cds function in mut_cds.R file to get frequency data of each mutation and return barplot using the data extracted

Usage

plot_cds(mutFile, hgncFile)

Arguments

mutFile	A .tsv file containing COSMIC point mutations
hgncFile	A .tsv file with complete approved human gene nomenclature IDs

Value

Returns barplot (descending order) using mutation frequency data obtained from mut_cds function

References

Kabacoff , R. (n.d.). Bar plots. Quick-R: Bar Plots. Retrieved November 21, 2021, from https://www.statmethods.net/graphs/bar.html.

Abedin, J., & Mittal, H. V. (n.d.). R Graphs. R Graphs Cookbook (Second Edition) - Displaying values on top of or next to the bars. Retrieved November 21, 2021, from https://subscription.packtpub.com/book/big_data_and_business_ intelligence/9781783988785/6/ch06lvl1sec69/displaying-values-on-top-of-or- next-to-the-bars.

Examples

# Using data files available in the package: "MutantData.tsv" and "HGNC.tsv"

# plot_cds("Data/MutantData.tsv", "Data/HGNC.tsv")

Jiyun1201/CANMutVisual documentation built on Dec. 18, 2021, 1:38 a.m.