annotate_snps: Annotate SNPs from genetic fine-mapping or GWAS index...
In Jmtorres138/TACTICAL: What the package does (One Line, Title Case)
View source: R/annotate_snps.R
Description
This function annotates SNPs to genomic annotations (e.g. coding sequence) and
tissue-level annotations (e.g. chromatin states). Each SNP is mapped against each
set of annotations contained within BED files listed within the genomic annotation file and
tissue annotation file. The annotation names listed in the annotation files must be consistent
with the annotation names listed within the BED files.
Usage
1
2
3
4
5
6
7
annotate_snps(
snp_file,
tissue_path_file,
tissue_annotation_file,
genomic_path_file,
genomic_annotation_file
)
Arguments
snp_file
Path to the input SNP file
tissue_path_file
Path to the input file of paths to tissue annotation bed files
tissue_annotation_file
Path to the input file of tissue annotation names and weights
genomic_path_file
Path to the input file of paths to genomic annotation bed files
genomic_annotation_file
Path to the input file of genomic annotation names and weights
Jmtorres138/TACTICAL documentation built on April 4, 2021, 3:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/annotate_snps.R
Description
This function annotates SNPs to genomic annotations (e.g. coding sequence) and tissue-level annotations (e.g. chromatin states). Each SNP is mapped against each set of annotations contained within BED files listed within the genomic annotation file and tissue annotation file. The annotation names listed in the annotation files must be consistent with the annotation names listed within the BED files.
Usage
1 2 3 4 5 6 7 | annotate_snps(
snp_file,
tissue_path_file,
tissue_annotation_file,
genomic_path_file,
genomic_annotation_file
)
|
Arguments
snp_file |
Path to the input SNP file |
tissue_path_file |
Path to the input file of paths to tissue annotation bed files |
tissue_annotation_file |
Path to the input file of tissue annotation names and weights |
genomic_path_file |
Path to the input file of paths to genomic annotation bed files |
genomic_annotation_file |
Path to the input file of genomic annotation names and weights |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.