GOenrichment: Over Representation Analysis
In JoWatson2011/R4JW: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Description
Calculate over enrichment of GO terms in
a sample Explanation can be found in:
https://mengnote.blogspot.co.uk/2012/12/calculate-correct-hypergeometric-p.html
Usage
1
GOenrichment(sampleDistr, sampleSize, bkgdDistr, bkgdSize, p = 0.05)
Arguments
sampleDistr
Output of GOdistr() for sample
sampleSize
Size of sample
bkgdDistr
Output of GOdistr() for background population
bkgdSize
Size of background population
p
Significance threshold
Value
Over represented GO terms as df
JoWatson2011/R4JW documentation built on Nov. 19, 2020, 10:24 p.m.
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Description Usage Arguments Value
Description
Calculate over enrichment of GO terms in
a sample Explanation can be found in:
https://mengnote.blogspot.co.uk/2012/12/calculate-correct-hypergeometric-p.html
Usage
1 | GOenrichment(sampleDistr, sampleSize, bkgdDistr, bkgdSize, p = 0.05)
|
Arguments
sampleDistr |
Output of GOdistr() for sample |
sampleSize |
Size of sample |
bkgdDistr |
Output of GOdistr() for background population |
bkgdSize |
Size of background population |
p |
Significance threshold |
Value
Over represented GO terms as df
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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