simplifyGO: Title
In JoWatson2011/R4JW: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Examples
Description
Remove semantically similar GO terms.
Based on code by Jamie Soul:
https://github.com/soulj/SkeletalVis-Pipeline/blob/master/src/SYBIL
Usage
1
simplifyGO(GORes, simplifyData = simplifyGOReqData(), simThresh = 0.4)
Arguments
GORes
dataframe with columns GOID and TERM
simplifyData
output of simplifyGOReqData
simThresh
threshold for semantic similarity
Value
filtered GORes dataframe
Examples
1
2
exampleGO <- data.frame(TERM = c(), GOID=c())
simplifyGO(exampleGO)
JoWatson2011/R4JW documentation built on Nov. 19, 2020, 10:24 p.m.
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Description Usage Arguments Value Examples
Description
Remove semantically similar GO terms.
Based on code by Jamie Soul:
https://github.com/soulj/SkeletalVis-Pipeline/blob/master/src/SYBIL
Usage
1 | simplifyGO(GORes, simplifyData = simplifyGOReqData(), simThresh = 0.4)
|
Arguments
GORes |
dataframe with columns GOID and TERM |
simplifyData |
output of simplifyGOReqData |
simThresh |
threshold for semantic similarity |
Value
filtered GORes dataframe
Examples
1 2 | exampleGO <- data.frame(TERM = c(), GOID=c())
simplifyGO(exampleGO)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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