create_target_df_shiny: Create target data frame

In JulFriedrich/miRetrieveShiny: miRetrieve Shiny

Description

Create target data frame for Shiny. Joins data frame with abstracts with miRTarBase 8.0 on its PMIDs and selects PMIDs, miRNAs as taken from miRTarBase, Targets, and Topic.

Usage

create_target_df_shiny(df_abstracts)

Arguments

df_abstracts

Data frame containing PMIDs and abstracts.

Details

These are not the same miRNAs as extracted while uploading the abstracts! The miRNAs are taken from miRTarBase, where only the miRNA stem (e.g. "miR-200" instead of "hsa-miR-200b-5p") is extracted.

Value

Target data frame. Data frame with four columns, namely PMID, miRNA (as taken from miRTarBase), Target, and Topic

JulFriedrich/miRetrieveShiny documentation built on Jan. 9, 2022, 8:29 a.m.