upload_abstracts_shiny: Upload abstracts for Shiny

In JulFriedrich/miRetrieveShiny: miRetrieve Shiny

Description

Upload abstracts for Shiny. Unlike in miRetrieve, columns "Type" and "Language" are dropped in miRetrieve Shiny after upload.

Usage

upload_abstracts_shiny(
  pubmed_file,
  threshold = 1,
  topic = NULL,
  subset_research = TRUE,
  extract_letters = FALSE
)

Arguments

pubmed_file	PubMed-file.
topic	String. Specifies topic name.
subset_research	Boolen. If TRUE, only abstracts of original research articles are kept.
extract_letters	Boolean. If TRUE, letters are extracted from miRNA names (e.g. miR-23a).
threshold.	Integer. Specifies how often a miRNA must be mentioned in Abstracts to be extracted.

Value

Uploaded data frame.

JulFriedrich/miRetrieveShiny documentation built on Jan. 9, 2022, 8:29 a.m.